<div> <i class="fas fa-dna" role="presentation" aria-label="dna icon"></i> Cow bone growth matrix vs gel </div>

Pathways heatmap
(click text box to select):

Heatmap Scaling:

Scaled (Z-score)

Unscaled (Log2)

Cluster Rows (Genes)

Cluster Columns (Samples)

Min Abs Log2(FC) Filter

Select FC Comparison Type:

Select Control Group(s):

Select Treatment Group(s):

Sample Order:
Samples are ordered by groups as defined in the YAML configuration file.
Current order: cMd14n_1, cMd14n_2, cMd14n_3, ...

Enter Gene Pattern for Bar Plot (e.g., 'CASP', '^CASP1__'):

Show ALL samples (including YAML-filtered)

Showing ALL samples (including YAML-excluded samples for QC review)

Select groups for Log2(FC) ratio:

Select Control Group(s):

Select Treatment Group(s):

Gene Selection:

Top N (Most Upregulated)

Bottom N (Most Downregulated)

Show N Genes:

Choose Pathway:

Choose Pathway to View Details:

Enter Gene Pattern to Retrieve Sequences: